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Package: sprai (0.9.9.23+dfsg-1)

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sprai

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single-pass sequencing read accuracy improver

Sprai is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads. Instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.

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  • dep: ncbi-blast+ (>= 2.2.27)
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  • dep: perl
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  • dep: time
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  • sug: make
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  • sug: pbalign
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  • sug: pbh5tools
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Download sprai

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 1,479.6 kB1701 kB [list of files]
i386 1,478.7 kB1699 kB [list of files]