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[ Source: velvet  ]

Package: velvet-long (1.2.10+dfsg1-3build1)

Links for velvet-long

velvet-long

Trisquel Resources:

Download Source Package velvet:

Maintainer:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Charles Plessy
  • Andreas Tille

External Resources:

Similar packages:

Nucleic acid sequence assembler for very short reads, long version

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

This package installs special long-mode versions of Velvet, as recommended in the Velvet tutorials.

Other Packages Related to velvet-long

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: velvet
    Nucleic acid sequence assembler for very short reads
  • dep: zlib1g (>= 1:1.2.0.2)
    compression library - runtime

Download velvet-long

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 190.3 kB1133 kB [list of files]
i386 221.4 kB1431 kB [list of files]