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[ Source: r-bioc-dexseq ]
Paketti: r-bioc-dexseq (1.40.0+dfsg-1)
Links for r-bioc-dexseq
Trisquel-palvelut:
Imuroi lähdekoodipaketti r-bioc-dexseq:
- [r-bioc-dexseq_1.40.0+dfsg-1.dsc]
- [r-bioc-dexseq_1.40.0+dfsg.orig.tar.xz]
- [r-bioc-dexseq_1.40.0+dfsg-1.debian.tar.xz]
Ylläpitäjä:
Original Maintainers:
- Debian R Packages Maintainers
- Michael R. Crusoe
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
GNU R inference of differential exon usage in RNA-Seq
The package is focused on finding differential exon usage using RNA-seq exon counts between samples with different experimental designs. It provides functions that allows the user to make the necessary statistical tests based on a model that uses the negative binomial distribution to estimate the variance between biological replicates and generalized linear models for testing. The package also provides functions for the visualization and exploration of the results.
Muut pakettiin r-bioc-dexseq liittyvät paketit
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- dep: r-api-4.0
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-api-bioc-3.14
- näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
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- dep: r-base-core (>= 4.1.2-1ubuntu1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-annotationdbi
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-biobase
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics
- generic functions for Bioconductor
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- dep: r-bioc-biocparallel
- BioConductor facilities for parallel evaluation
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- dep: r-bioc-biomart
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-deseq2 (>= 1.9.11)
- R package for RNA-Seq Differential Expression Analysis
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- dep: r-bioc-genefilter
- methods for filtering genes from microarray experiments
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- dep: r-bioc-geneplotter
- R package of functions for plotting genomic data
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- dep: r-bioc-genomicranges (>= 1.23.7)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.5.17)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-s4vectors (>= 0.23.18)
- BioConductor S4 implementation of vectors and lists
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- dep: r-bioc-summarizedexperiment
- BioConductor assay container
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- dep: r-cran-hwriter
- HTML Writer - Outputs R objects in HTML format
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- dep: r-cran-rcolorbrewer
- GNU R package providing suitable color palettes
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- dep: r-cran-statmod
- GNU R package providing algorithms and functions for statistical modeling
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- dep: r-cran-stringr
- Make it easier to work with strings
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-genomicfeatures (>= 1.13.29)
- GNU R tools for making and manipulating transcript centric annotations
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- convert R markdown documents into a variety of formats
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- sug: r-cran-testthat
- GNU R testsuite
Imuroi r-bioc-dexseq
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 434.9 kt | 669 kt | [tiedostoluettelo] |