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Paketti: libgkarrays1 (2.1.0+dfsg-4)

library to query large collection of NGS sequences

Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche).

Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?).

Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times.

Muut pakettiin libgkarrays1 liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.17) [arm64, ppc64el]
    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [ei armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

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Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 49.5 kt162 kt [tiedostoluettelo]
arm64 45.6 kt144 kt [tiedostoluettelo]
armhf 44.8 kt120 kt [tiedostoluettelo]
ppc64el 52.6 kt237 kt [tiedostoluettelo]