Skip to content
Sections
>> Trisquel >> Paketit >> aramo >> science >> pirs
[  etiona  ] [  nabia  ] [  aramo  ]
[ Source: pirs  ]

Paketti: pirs (2.0.2+dfsg-10)

Profile based Illumina pair-end Reads Simulator

The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.

The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.

The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.

To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.

Muut pakettiin pirs liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: fonts-liberation
    Fonts with the same metrics as Times, Arial and Courier
  • dep: gnuplot
    Command-line driven interactive plotting program.
    myös näennäispaketti, jonka toteuttaa gnuplot-nox, gnuplot-qt, gnuplot-x11
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [ei armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libgzstream0 (>= 1.5+dfsg)
    provide functionality of zlib C-library in a C++ iostream
  • dep: libstdc++6 (>= 11)
    GNU Standard C++ Library v3
  • dep: pirs-profiles
    profile basd Illumina pair-end Reads Simulator (profile data)
  • dep: zlib1g (>= 1:1.2.0.2)
    compression library - runtime

Imuroi pirs

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 114.9 kt383 kt [tiedostoluettelo]
arm64 111.6 kt359 kt [tiedostoluettelo]
armhf 107.0 kt309 kt [tiedostoluettelo]
ppc64el 119.9 kt423 kt [tiedostoluettelo]