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Paketti: gmap (2021-12-17+ds-1)

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gmap

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spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of 

 * known splice sites and identify novel splice sites.
 * known single-nucleotide polymorphisms (SNPs).
GSNAP can align bisulfite-treated DNA.

Muut pakettiin gmap liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: zlib1g (>= 1:1.2.6)
    compression library - runtime

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