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Paketti: virulencefinder (2.0.4-2)

identify virulence genes in total or partial sequenced isolates of bacteria

The VirulenceFinder service contains one Python script virulencefinder.py which is the script of the latest version of the VirulenceFinder service. VirulenceFinder identifies viruelnce genes in total or partial sequenced isolates of bacteria - at the moment only E. coli, Enterococcus, S. aureus and Listeria are available.

Muut pakettiin virulencefinder liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: kma
    mapping genomic sequences to raw reads directly against redundant databases
  • dep: ncbi-blast+
    next generation suite of BLAST sequence search tools
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
  • dep: python3-cgecore
    Python3 module for the Center for Genomic Epidemiology
  • dep: python3-distutils
    distutils package for Python 3.x
  • dep: python3-tabulate
    pretty-print tabular data in Python3

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