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Paketti: python3-dna-jellyfish (2.3.0-12ubuntu2)

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python3-dna-jellyfish

Trisquel-palvelut:

Imuroi lähdekoodipaketti jellyfish:

Ylläpitäjä:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Shaun Jackman
  • Andreas Tille
  • Michael R. Crusoe
  • Étienne Mollier

External Resources:

Samankaltaisia paketteja:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Muut pakettiin python3-dna-jellyfish liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [ei armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libjellyfish-2.0-2 (>= 2.3.0)
    count k-mers in DNA sequences (dynamic library of jellyfish)
  • dep: libstdc++6 (>= 5.2) [armhf]
    GNU Standard C++ Library v3
    dep: libstdc++6 (>= 9) [ei armhf]
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.11)
    dep: python3 (>= 3.10~)

Imuroi python3-dna-jellyfish

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amd64 52.4 kt168 kt [tiedostoluettelo]
arm64 50.9 kt164 kt [tiedostoluettelo]
armhf 54.7 kt137 kt [tiedostoluettelo]
ppc64el 63.9 kt236 kt [tiedostoluettelo]