Paketti: abacas (1.3.1-4)
Links for abacas
Trisquel-palvelut:
Imuroi lähdekoodipaketti abacas:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Kotisivu [abacas.sourceforge.net]
Samankaltaisia paketteja:
Algorithm Based Automatic Contiguation of Assembled Sequences
ABACAS is intended to rapidly contiguate (align, order, orientate), visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence.
ABACAS uses MUMmer to find alignment positions and identify syntenies of assembled contigs against the reference. The output is then processed to generate a pseudomolecule taking overlapping contigs and gaps in to account. ABACAS generates a comparison file that can be used to visualize ordered and oriented contigs in ACT. Synteny is represented by red bars where colour intensity decreases with lower values of percent identity between comparable blocks. Information on contigs such as the orientation, percent identity, coverage and overlap with other contigs can also be visualized by loading the outputted feature file on ACT.
Muut pakettiin abacas liittyvät paketit
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- dep: mummer
- Efficient sequence alignment of full genomes
Imuroi abacas
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
---|---|---|---|
all | 23.6 kt | 109 kt | [tiedostoluettelo] |