[ Source: seqtools ]
Paketti: belvu (4.44.1+dfsg-2build1)
Links for belvu
Trisquel-palvelut:
Imuroi lähdekoodipaketti seqtools:
- [seqtools_4.44.1+dfsg-2build1.dsc]
- [seqtools_4.44.1+dfsg.orig.tar.xz]
- [seqtools_4.44.1+dfsg-2build1.debian.tar.xz]
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Kotisivu [www.sanger.ac.uk]
Samankaltaisia paketteja:
multiple sequence alignment viewer and phylogenetic tool
Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.
* View multiple sequence alignments. * Residues can be coloured by conservation, with user-configurable cutoffs and colours. * Residues can be coloured by residue type (user-configurable). * Colour schemes can be imported or exported. * Swissprot (or PIR) entries can be fetched by double clicking. * The position in the alignment can be easily tracked. * Manual deletion of rows and columns. * Automatic editing of rows and columns based on customisable criteria: - removal of all-gap columns; - removal of all gaps; - removal of redundant sequences; - removal of a column by a user-specified percentage of gaps; - filtering of sequences by percent identity; - removal of sequences by a user-specified percentage of gaps; - removal of partial sequences (those starting or ending with gaps); and - removal of columns by conservation (with user-specified upper/lower cutoffs). * The alignment can be saved in Stockholm, Selex, MSF or FASTA format. * Distance matrices between sequences can be generated using a variety of distance metrics. * Distance matrices can be imported or exported. * Phylogenetic trees can be constructed based on various distance-based tree reconstruction algorithms. * Trees can be saved in New Hampshire format. * Belvu can perform bootstrap phylogenetic reconstruction.
Muut pakettiin belvu liittyvät paketit
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libcairo2 (>= 1.2.4)
- Cairo 2D vector graphics library
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- dep: libcurl4 (>= 7.16.2)
- easy-to-use client-side URL transfer library (OpenSSL flavour)
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- dep: libgbtools0
- library for visualising sequence alignments
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- dep: libglib2.0-0 (>= 2.22.0)
- GLib library of C routines
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- dep: libgtk2.0-0 (>= 2.12.0)
- GTK+ graphical user interface library
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- dep: libpango-1.0-0 (>= 1.14.0)
- Layout and rendering of internationalized text
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- dep: libstdc++6 (>= 4.1.1)
- GNU Standard C++ Library v3
Imuroi belvu
Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
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amd64 | 99.1 kt | 295 kt | [tiedostoluettelo] |
i386 | 109.0 kt | 318 kt | [tiedostoluettelo] |