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Paketti: belvu (4.44.1+dfsg-2build1)

multiple sequence alignment viewer and phylogenetic tool

Belvu is a multiple sequence alignment viewer and phylogenetic tool with an extensive set of user-configurable modes to color residues.

 * View multiple sequence alignments.
 * Residues can be coloured by conservation, with user-configurable
   cutoffs and colours.
 * Residues can be coloured by residue type (user-configurable).
 * Colour schemes can be imported or exported.
 * Swissprot (or PIR) entries can be fetched by double clicking.
 * The position in the alignment can be easily tracked.
 * Manual deletion of rows and columns.
 * Automatic editing of rows and columns based on customisable criteria:
    - removal of all-gap columns;
    - removal of all gaps;
    - removal of redundant sequences;
    - removal of a column by a user-specified percentage of gaps;
    - filtering of sequences by percent identity;
    - removal of sequences by a user-specified percentage of gaps;
    - removal of partial sequences (those starting or ending with
      gaps); and
    - removal of columns by conservation (with user-specified
      upper/lower cutoffs).
 * The alignment can be saved in Stockholm, Selex, MSF or FASTA format.
 * Distance matrices between sequences can be generated using a variety
   of distance metrics.
 * Distance matrices can be imported or exported.
 * Phylogenetic trees can be constructed based on various distance-based
   tree reconstruction algorithms.
 * Trees can be saved in New Hampshire format.
 * Belvu can perform bootstrap phylogenetic reconstruction.

Muut pakettiin belvu liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libcairo2 (>= 1.2.4)
    Cairo 2D vector graphics library
  • dep: libcurl4 (>= 7.16.2)
    easy-to-use client-side URL transfer library (OpenSSL flavour)
  • dep: libgbtools0
    library for visualising sequence alignments
  • dep: libglib2.0-0 (>= 2.22.0)
    GLib library of C routines
  • dep: libgtk2.0-0 (>= 2.12.0)
    GTK+ graphical user interface library
  • dep: libpango-1.0-0 (>= 1.14.0)
    Layout and rendering of internationalized text
  • dep: libstdc++6 (>= 4.1.1)
    GNU Standard C++ Library v3

Imuroi belvu

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 99.1 kt295 kt [tiedostoluettelo]
i386 109.0 kt318 kt [tiedostoluettelo]