Skip to content
Sections
>> Trisquel >> Paketit >> etiona >> science >> cain
[  etiona  ]
[ Source: cain  ]

Paketti: cain (1.10+dfsg-2)

simulations of chemical reactions

Cain performs stochastic and deterministic simulations of chemical reactions. It can spawn multiple simulation processes to utilize multi-core computers. It stores models, methods, and simulation output (populations and reaction counts) in an XML format. In addition, SBML models can be imported and exported. The models and methods can be read from input files or edited within the program.

The GUI (Graphical User Interface) is written in Python and uses the wxPython toolkit. Most of the solvers are implemented as command line executables, written in C++, which are driven by Cain. This makes it easy to launch batch jobs. It also simplifies the process of adding new solvers. Cain offers a variety of solvers: 

 * Gillespie's direct method.
 * Gillespie's first reaction method.
 * Gibson and Bruck's next reaction method.
 * Tau-leaping.
 * Hybrid direct/tau-leaping.
 * ODE integration.

This package provides the architecture independent files for cain

Muut pakettiin cain liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: cain-solvers
    solvers for cain
  • dep: python
    interactive high-level object-oriented language (default version)
    dep: python (<< 3.0)
  • dep: python-matplotlib
    Python based plotting system in a style similar to Matlab
  • dep: python-numpy
    Numerical Python adds a fast array facility to the Python language
  • dep: python-scipy
    scientific tools for Python
  • dep: python-sympy
    Computer Algebra System (CAS) in Python
  • dep: python-wxgtk3.0
    Python interface to the wxWidgets Cross-platform C++ GUI toolkit

Imuroi cain

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
all 10,436.6 kt15974 kt [tiedostoluettelo]