[ Source: r-bioc-ensembldb ]
Paketti: r-bioc-ensembldb (2.2.2-1)
Links for r-bioc-ensembldb
Trisquel-palvelut:
Imuroi lähdekoodipaketti r-bioc-ensembldb:
- [r-bioc-ensembldb_2.2.2-1.dsc]
- [r-bioc-ensembldb_2.2.2.orig.tar.gz]
- [r-bioc-ensembldb_2.2.2-1.debian.tar.xz]
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Kotisivu [bioconductor.org]
Samankaltaisia paketteja:
GNU R utilities to create and use an Ensembl based annotation database
The package provides functions to create and use transcript centric annotation databases/packages. The annotation for the databases are directly fetched from Ensembl using their Perl API. The functionality and data is similar to that of the TxDb packages from the GenomicFeatures package, but, in addition to retrieve all gene/transcript models and annotations from the database, the ensembldb package provides also a filter framework allowing to retrieve annotations for specific entries like genes encoded on a chromosome region or transcript models of lincRNA genes.
Muut pakettiin r-bioc-ensembldb liittyvät paketit
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- dep: r-api-3.4
- näennäispaketti, jonka toteuttaa r-base-core
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- dep: r-base-core (>= 3.4.3-1)
- GNU R core of statistical computation and graphics system
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- dep: r-bioc-annotationdbi (>= 1.31.19)
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-annotationfilter (>= 1.1.9)
- facilities for filtering Bioconductor annotation resources
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- dep: r-bioc-annotationhub
- GNU R client to access AnnotationHub resources
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- dep: r-bioc-biobase
- base functions for Bioconductor
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- dep: r-bioc-biocgenerics (>= 0.15.10)
- generic functions for Bioconductor
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- dep: r-bioc-biostrings
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicfeatures (>= 1.29.10)
- GNU R tools for making and manipulating transcript centric annotations
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- dep: r-bioc-genomicranges (>= 1.23.21)
- BioConductor representation and manipulation of genomic intervals
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- dep: r-bioc-iranges (>= 2.11.16)
- GNU R low-level containers for storing sets of integer ranges
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- dep: r-bioc-protgenerics
- S4 generic functions for Bioconductor proteomics infrastructure
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- dep: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- dep: r-bioc-rtracklayer
- GNU R interface to genome browsers and their annotation tracks
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- dep: r-bioc-s4vectors
- BioConductor S4 implementation of vectors and lists
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- dep: r-cran-curl
- GNU R modern and flexible web client for R
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- dep: r-cran-dbi
- GNU R package providing a generic database interface
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- dep: r-cran-rsqlite (>= 1.1)
- Database Interface R driver for SQLite
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- sug: r-bioc-gviz (>= 1.20.0)
- Plotting data and annotation information along genomic coordinates
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-magrittr
- GNU R forward-pipe operator
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- sug: r-cran-shiny
- GNU R web application framework
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- sug: r-cran-testthat
- GNU R testsuite
Imuroi r-bioc-ensembldb
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| all | 1,792.7 kt | 5163 kt | [tiedostoluettelo] |