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[ Source: libtfbs-perl  ]

Paketti: libtfbs-perl (0.7.1-1)

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libtfbs-perl

Trisquel-palvelut:

Imuroi lähdekoodipaketti libtfbs-perl:

Ylläpitäjä:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Steffen Moeller
  • Charles Plessy
  • Andreas Tille

External Resources:

Samankaltaisia paketteja:

scanning DNA sequence with a position weight matrix

The TFBS perl modules comprise a set of routines to interact with the Transfac and Jaspar databases that describe a special family of proteins, the transcription factors. These bind to genomic DNA to initiate (or prevent) the readout of a gene. Once multiple binding sites are known for a transcription factor, these are gathered in a single file and are aligned in order to find position-specific characteristica that might be used to predict such binding events in novel DNA sequences.

If you use TFBS in your work, please cite "Lenhard B., Wasserman W.W. (2002) TFBS: Computational framework for transcription factor binding site analysis. Bioinformatics 18:1135-1136".

Note: the TFBS perl module is no longer under active development. All the functionality can be found in the TFBSTools Bioconductor package; users are highly encouraged to switch. <http://bioconductor.org/packages/TFBSTools/>

Muut pakettiin libtfbs-perl liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: bioperl
    Perl tools for computational molecular biology
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: libdbi-perl
    Perl Database Interface (DBI)
  • dep: libwww-perl
    simple and consistent interface to the world-wide web
  • dep: pdl (>= 1:2.018-1ubuntu4)
    perl data language: Perl extensions for numerics
  • dep: pdlapi-12
    näennäispaketti, jonka toteuttaa pdl
  • dep: perl (>= 5.26.1-2ubuntu1)
    Larry Wall's Practical Extraction and Report Language
  • dep: perlapi-5.26.1
    näennäispaketti, jonka toteuttaa perl-base

Imuroi libtfbs-perl

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Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 234.4 kt830 kt [tiedostoluettelo]
i386 235.2 kt830 kt [tiedostoluettelo]