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Paketti: python-cobra (0.5.9-1build2)

constraint-based modeling of biological networks (Python 2)

COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accommodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux balance analysis, flux variability analysis, and gene deletion analyses.

This package provides the Python 2 module.

Muut pakettiin python-cobra liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.4)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libglpk40 (>= 4.59)
    linear programming kit with integer (MIP) support
  • dep: python
    interactive high-level object-oriented language (default version)
    dep: python (<< 2.8)
    dep: python (>= 2.7~)
  • dep: python-cobra-data (= 0.5.9-1build2)
    constraint-based modeling of biological networks (data)
  • dep: python-six
    Python 2 and 3 compatibility library (Python 2 interface)
  • rec: libsbml5-python
    System Biology Markup Language library - Python bindings
  • rec: python-numpy
    Numerical Python adds a fast array facility to the Python language
  • rec: python-pandas
    data structures for "relational" or "labeled" data
  • rec: python-scipy
    scientific tools for Python
  • sug: python-matplotlib
    Python based plotting system in a style similar to Matlab
  • sug: qsopt-ex
    Exact linear programming solver

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