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Paketti: python3-dna-jellyfish (2.2.8-3build1)

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python3-dna-jellyfish

Trisquel-palvelut:

Imuroi lähdekoodipaketti jellyfish:

Ylläpitäjä:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Shaun Jackman
  • Andreas Tille
  • Michael R. Crusoe

External Resources:

Samankaltaisia paketteja:

count k-mers in DNA sequences (Python bindings of jellyfish)

JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.

This package contains the Python bindings of jellyfish.

Muut pakettiin python3-dna-jellyfish liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libjellyfish-2.0-2
    count k-mers in DNA sequences (dynamic library of jellyfish)
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python3
    interactive high-level object-oriented language (default python3 version)
    dep: python3 (<< 3.7)
    dep: python3 (>= 3.6~)

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