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[ Source: discosnp ]
Paketti: discosnp (1.2.6-2)
Links for discosnp
Trisquel-palvelut:
Imuroi lähdekoodipaketti discosnp:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Olivier Sallou
- Andreas Tille
External Resources:
- Kotisivu [colibread.inria.fr]
Samankaltaisia paketteja:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
Muut pakettiin discosnp liittyvät paketit
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- dep: bc
- GNU bc arbitrary precision calculator language
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: zlib1g (>= 1:1.2.3.4)
- compression library - runtime
Imuroi discosnp
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 143.9 kt | 336 kt | [tiedostoluettelo] |
| i386 | 154.8 kt | 351 kt | [tiedostoluettelo] |