[ Source: exonerate ]
Paketti: exonerate (2.4.0-3)
Links for exonerate
Trisquel-palvelut:
Imuroi lähdekoodipaketti exonerate:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Steffen Moeller
- Charles Plessy
- Andreas Tille
External Resources:
- Kotisivu [www.ebi.ac.uk]
Samankaltaisia paketteja:
generic tool for pairwise sequence comparison
Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.
An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.
This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb
Muut pakettiin exonerate liittyvät paketit
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
- dep: libc6 (>= 2.7) [i386]
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- dep: libglib2.0-0 (>= 2.24.0)
- GLib library of C routines
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- sug: wise
- comparison of biopolymers, like DNA and protein sequences
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- enh: bioperl-run
- BioPerl wrappers: scripts
Imuroi exonerate
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 1,569.2 kt | 8573 kt | [tiedostoluettelo] |
| i386 | 1,719.5 kt | 9096 kt | [tiedostoluettelo] |