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Paketti: hinge (0.5.0-3)

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hinge

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long read genome assembler based on hinging

HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers.

Muut pakettiin hinge liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: daligner
    local alignment discovery between long nucleotide sequencing reads
  • dep: dascrubber
    alignment-based scrubbing pipeline for DNA sequencing reads
  • dep: dazzdb
    manage nucleotide sequencing read data
  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libgomp1 (>= 4.2.1)
    GCC OpenMP (GOMP) support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-colormap
    ease manipulation of matplotlib colormaps and color codecs (Python 2)
  • dep: python-configparser
    backport of the enhanced config parser introduced in Python 3.2
  • dep: python-matplotlib
    Python based plotting system in a style similar to Matlab
  • dep: python-networkx
    tool to create, manipulate and study complex networks
  • dep: python-numpy
    Numerical Python adds a fast array facility to the Python language
  • dep: python-pbcore
    Python library for processing PacBio data files
  • dep: python-ujson
    ultra fast JSON encoder and decoder for Python 2
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

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amd64 382.0 kt2450 kt [tiedostoluettelo]