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Paketti: iqtree (1.6.1+dfsg-1)

Links for iqtree

iqtree

Trisquel-palvelut:

Imuroi lähdekoodipaketti iqtree:

Ylläpitäjä:

Original Maintainers:

  • Debian Med Packaging Team (Mail Archive)
  • Andreas Tille
  • Kevin Murray

External Resources:

Samankaltaisia paketteja:

efficient phylogenetic software by maximum likelihood

IQ-TREE is a very efficient maximum likelihood phylogenetic software with following key features among others: 

 * A novel fast and effective stochastic algorithm to estimate maximum
   likelihood trees. IQ-TREE outperforms both RAxML and PhyML in terms
   of likelihood while requiring similar amount of computing time (see
   Nguyen et al., 2015)
 * An ultrafast bootstrap approximation to assess branch supports (see
   Minh et al., 2013).
 * A wide range of substitution models for binary, DNA, protein, codon,
   and morphological alignments.
 * Ultrafast model selection for all data types, 10 to 100 times faster
   than jModelTest and ProtTest.
 * Finding best partition scheme like PartitionFinder.
 * Partitioned models with mixed data types for phylogenomic (multi-
   gene) alignments, allowing for separate, proportional, or joint
   branch lengths among genes.
 * Supporting the phylogenetic likelihod library (PLL) (see Flouri et
   al., 2014)

Muut pakettiin iqtree liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: libgcc1 (>= 1:4.0) [amd64]
    GCC support library
    dep: libgcc1 (>= 1:4.2) [i386]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: libopenmpi2
    high performance message passing library -- shared library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Imuroi iqtree

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 2,626.2 kt15778 kt [tiedostoluettelo]
i386 2,445.0 kt14028 kt [tiedostoluettelo]