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Paketti: poretools (0.6.0+dfsg-2)

Links for poretools

poretools

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toolkit for nanopore nucleotide sequencing data

poretools is a flexible toolkit for exploring datasets generated by nanopore sequencing devices from MinION for the purposes of quality control and downstream analysis. Poretools operates directly on the native FAST5 (a variant of the HDF5 standard) file format produced by ONT and provides a wealth of format conversion utilities and data exploration and visualization tools.

Muut pakettiin poretools liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-h5py
    general-purpose Python interface to hdf5 (Python 2)
  • dep: python-matplotlib
    Python based plotting system in a style similar to Matlab
  • dep: python-pandas
    data structures for "relational" or "labeled" data
  • dep: python-pkg-resources
    Package Discovery and Resource Access using pkg_resources
  • dep: python-seaborn
    statistical visualization library for Python

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