[ Source: sga ]
Paketti: sga (0.10.15-3)
Links for sga
Trisquel-palvelut:
Imuroi lähdekoodipaketti sga:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Michael R. Crusoe
- Andreas Tille
External Resources:
- Kotisivu [github.com]
Samankaltaisia paketteja:
de novo genome assembler that uses string graphs
The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.
Muut pakettiin sga liittyvät paketit
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- dep: libbamtools2.4.0
- dynamic library for manipulating BAM (genome alignment) files
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- dep: libc6 (>= 2.23)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: python-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 2)
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- dep: python-ruffus
- Python computation pipeline library widely used in bioinformatics
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- dep: samtools
- processing sequence alignments in SAM and BAM formats
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- dep: zlib1g (>= 1:1.1.4)
- compression library - runtime
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- rec: abyss (>= 2.0.2-1)
- Paketti ei saatavilla
Imuroi sga
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 974.8 kt | 2931 kt | [tiedostoluettelo] |