[ Source: spades ]
Paketti: spades (3.11.1+dfsg-1)
Links for spades
Trisquel-palvelut:
Imuroi lähdekoodipaketti spades:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
- Afif Elghraoui
- Sascha Steinbiss
- Michael R. Crusoe
External Resources:
- Kotisivu [cab.spbu.ru]
Samankaltaisia paketteja:
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
Muut pakettiin spades liittyvät paketit
|
|
|
-
- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
-
- dep: bwa
- Burrows-Wheeler Aligner
-
- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
-
- dep: libgcc1 (>= 1:4.0)
- GCC support library
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libhat-trie0
- HAT-trie, an extremely efficient (space and time) modern variant of tries
-
- dep: libjemalloc1 (>= 2.1.1)
- general-purpose scalable concurrent malloc(3) implementation
-
- dep: libnlopt0 (>= 2.2.4)
- nonlinear optimization library
-
- dep: libssw0
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: python-joblib
- tools to provide lightweight pipelining in Python
-
- dep: python-yaml
- YAML parser and emitter for Python
-
- dep: samtools
- processing sequence alignments in SAM and BAM formats
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
Imuroi spades
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 3,673.8 kt | 17287 kt | [tiedostoluettelo] |