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[ Source: htslib  ]

Paketti: tabix (1.7-2)

generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This version of tabix is built from the HTSlib source.

Muut pakettiin tabix liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libcurl3-gnutls (>= 7.18.0)
    easy-to-use client-side URL transfer library (GnuTLS flavour)
  • dep: liblzma5 (>= 5.1.1alpha+20120614)
    XZ-format compression library
  • dep: libssl1.1 (>= 1.1.0)
    Secure Sockets Layer toolkit - shared libraries
  • dep: zlib1g (>= 1:1.2.0)
    compression library - runtime

Imuroi tabix

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 318.4 kt1692 kt [tiedostoluettelo]
i386 344.1 kt1925 kt [tiedostoluettelo]