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Paketti: theseus (3.3.0-6)

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theseus

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superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Muut pakettiin theseus liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: clustalo
    General purpose multiple sequence alignment program for proteins
  • dep: libc6 (>= 2.15) [i386]
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.22) [amd64]
  • dep: libgsl23
    GNU Scientific Library (GSL) -- library package
  • dep: libgslcblas0
    GNU Scientific Library (GSL) -- blas library package
  • dep: muscle
    Multiple alignment program of protein sequences
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: dialign
    Segment-based multiple sequence alignment
  • sug: kalign
    Global and progressive multiple sequence alignment
  • sug: mafft
    Multiple alignment program for amino acid or nucleotide sequences
  • sug: probcons
    PROBabilistic CONSistency-based multiple sequence alignment
  • sug: t-coffee
    Multiple Sequence Alignment
  • sug: theseus-examples
    superimpose macromolecules using maximum likelihood (examples)

Imuroi theseus

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 416.2 kt1083 kt [tiedostoluettelo]
i386 288.6 kt845 kt [tiedostoluettelo]