[ etiona ]
[ Source: tophat ]
Paketti: tophat (2.1.1+dfsg1-1)
Links for tophat
Trisquel-palvelut:
Imuroi lähdekoodipaketti tophat:
Ylläpitäjä:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Carlos Borroto
- Alexandre Mestiashvili
- Andreas Tille
External Resources:
- Kotisivu [ccb.jhu.edu]
Samankaltaisia paketteja:
fast splice junction mapper for RNA-Seq reads
TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.
Muut pakettiin tophat liittyvät paketit
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- dep: libboost-system1.65.1
- Operating system (e.g. diagnostics support) library
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- dep: libboost-thread1.65.1
- portable C++ multi-threading
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- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
myös näennäispaketti, jonka toteuttaa libc6-udeb
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- dep: python
- interactive high-level object-oriented language (default version)
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- dep: samtools (>= 1.5)
- processing sequence alignments in SAM and BAM formats
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- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
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- sug: cufflinks
- Paketti ei saatavilla
Imuroi tophat
| Arkkitehtuuri | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|
| amd64 | 659.8 kt | 3807 kt | [tiedostoluettelo] |