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Paketti: libhts3 (1.10.2-3ubuntu0.1)

C library for high-throughput sequencing data formats

HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang.

HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent.

Muut pakettiin libhts3 liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libbz2-1.0
    high-quality block-sorting file compressor library - runtime
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libcurl3-gnutls (>= 7.18.0)
    easy-to-use client-side URL transfer library (GnuTLS flavour)
  • dep: libdeflate0 (>= 1.0)
    fast, whole-buffer DEFLATE-based compression and decompression
  • dep: liblzma5 (>= 5.1.1alpha+20120614)
    XZ-format compression library
  • dep: libssl1.1 (>= 1.1.0)
    Secure Sockets Layer toolkit - shared libraries
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Imuroi libhts3

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amd64 341.7 kt864 kt [tiedostoluettelo]
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