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Paketti: r-bioc-rsamtools (2.2.3-1)

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Muut pakettiin r-bioc-rsamtools liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libcurl4 (>= 7.18.0)
    easy-to-use client-side URL transfer library (OpenSSL flavour)
  • dep: libgcc-s1 (>= 3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: r-api-3.5
    näennäispaketti, jonka toteuttaa r-base-core
  • dep: r-api-bioc-3.10
    näennäispaketti, jonka toteuttaa r-bioc-biocgenerics
  • dep: r-base-core (>= 3.6.2.20200221-1)
    GNU R core of statistical computation and graphics system
  • dep: r-bioc-biocgenerics (>= 0.25.1)
    generic functions for Bioconductor
  • dep: r-bioc-biocparallel
    BioConductor facilities for parallel evaluation
  • dep: r-bioc-biostrings (>= 2.47.6)
    GNU R string objects representing biological sequences
  • dep: r-bioc-genomeinfodb (>= 1.1.3)
    BioConductor utilities for manipulating chromosome identifiers
  • dep: r-bioc-genomicranges (>= 1.31.8)
    BioConductor representation and manipulation of genomic intervals
  • dep: r-bioc-iranges (>= 2.13.12)
    GNU R low-level containers for storing sets of integer ranges
  • dep: r-bioc-rhtslib (>= 1.17.7)
    HTSlib high-throughput sequencing library as GNU R package
  • dep: r-bioc-s4vectors (>= 0.17.25)
    BioConductor S4 implementation of vectors and lists
  • dep: r-bioc-xvector (>= 0.19.7)
    BioConductor representation and manpulation of external sequences
  • dep: r-bioc-zlibbioc
    (Virtual) zlibbioc Bioconductor package
  • dep: r-cran-bitops
    GNU R package implementing bitwise operations
  • rec: r-bioc-shortread
    GNU R classes and methods for high-throughput short-read sequencing data
  • rec: r-cran-runit
    GNU R package providing unit testing framework

Imuroi r-bioc-rsamtools

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amd64 3,630.4 kt5628 kt [tiedostoluettelo]