Skip to content
Sections
>> Trisquel >> Paketit >> nabia >> science >> bbmap
nabia  ] [  aramo  ]
[ Source: bbmap  ]

Paketti: bbmap (38.79+dfsg-1)

short read aligner and other bioinformatic tools

BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels.

BBMap is multithreaded as well as the other tools bundled into this package for instance:

BBNorm: Kmer-based error-correction and normalization tool.

Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity.

Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s.

BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file.

Muut pakettiin bbmap liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libmpj-java
    Java library for parallel applications for multicore processors and clusters
  • rec: pigz
    Parallel Implementation of GZip

Imuroi bbmap

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
all 5,097.0 kt5932 kt [tiedostoluettelo]