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Paketti: libseqlib-dev (1.1.2+dfsg-6)

C++ htslib/bwa-mem/fermi interface for interrogating sequence data (dev)

C++ API and command line tool that provides a rapid and user-friendly interface to BAM/SAM/CRAM files, global sequence alignment operations and sequence assembly. Four C libraries perform core operations in SeqLib: HTSlib for BAM access, BWA-MEM and BLAT for sequence alignment and Fermi for error correction and sequence assembly. Benchmarking indicates that SeqLib has lower CPU and memory requirements than leading C++ sequence analysis APIs. Minimal SeqLib code can extract, error-correct and assemble reads from a CRAM file and then align with BWA-MEM. SeqLib also provides additional capabilities, including chromosome-aware interval queries and read plotting. Command line tools are available for performing integrated error correction, micro-assemblies and alignment.

This package contains the header files and static library.

Muut pakettiin libseqlib-dev liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libbwa-dev
    Burrows-Wheeler Aligner source files
  • dep: libfml-dev
    development headers for libfml
  • dep: libhts-dev
    development files for the HTSlib
  • dep: libjsoncpp-dev
    library for reading and writing JSON for C++ (devel files)
  • dep: libseqlib1 (= 1.1.2+dfsg-6)
    C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  • dep: libssw-dev
    Development headers and static libraries for libssw
    myös näennäispaketti, jonka toteuttaa libssw-dev
  • dep: zlib1g-dev
    compression library - development

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