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Paketti: samtools (1.10-3)

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Muut pakettiin samtools liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.29)
    GNU C Library: Shared libraries
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libhts3 (>= 1.10)
    C library for high-throughput sequencing data formats
  • dep: libncurses6 (>= 6)
    shared libraries for terminal handling
  • dep: libtinfo6 (>= 6)
    shared low-level terminfo library for terminal handling
  • dep: zlib1g (>= 1:1.1.4) [amd64]
    compression library - runtime
    dep: zlib1g (>= 1:1.2.3.3) [armhf]
  • rec: cwltool
    Common Workflow Language reference implementation
  • rec: python3
    interactive high-level object-oriented language (default python3 version)

Imuroi samtools

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
amd64 484.8 kt1146 kt [tiedostoluettelo]
armhf 457.1 kt911 kt [tiedostoluettelo]