Skip to content
Sections
>> Trisquel >> Paquets >> aramo >> science >> samtools
etiona  ] [  nabia  ] [  aramo  ]
[ Paquet source : samtools  ]

Paquet : samtools (1.13-4)

processing sequence alignments in SAM, BAM and CRAM formats

Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) and CRAM formats, does sorting, merging and indexing, and allows one to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM or CRAM (not SAM) file on a remote FTP or HTTP server.

Autres paquets associés à samtools

  • dépendances
  • recommandations
  • suggestions
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libhts3 (>= 1.13)
    C library for high-throughput sequencing data formats
  • dep: libncurses6 (>= 6)
    shared libraries for terminal handling
  • dep: libtinfo6 (>= 6)
    shared low-level terminfo library for terminal handling
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • sug: cwltool
    Common Workflow Language reference implementation

Télécharger samtools

Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 507,6 ko1155 ko [liste des fichiers]