Paquet : chromhmm (1.23+dfsg-1)
Liens pour chromhmm
Ressources Trisquel :
Télécharger le paquet source chromhmm :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Dylan Aïssi
Ressources externes :
- Page d'accueil [compbio.mit.edu]
Paquets similaires :
Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.
Autres paquets associés à chromhmm
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- dep: default-jre
- Standard Java or Java compatible Runtime
- ou java7-runtime
- paquet virtuel fourni par default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-18-jre, openjdk-8-jre
- ou java8-runtime
- paquet virtuel fourni par default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-18-jre, openjdk-8-jre
- ou java9-runtime
- paquet virtuel fourni par default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-18-jre
- ou java10-runtime
- paquet virtuel fourni par default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-18-jre
- ou java11-runtime
- paquet virtuel fourni par default-jre, openjdk-11-jre, openjdk-17-jre, openjdk-18-jre
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- dep: libbatik-java
- xml.apache.org SVG Library
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- dep: libhtsjdk-java
- Java API for high-throughput sequencing data (HTS) formats
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- dep: libjheatchart-java
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Télécharger chromhmm
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
all | 181,7 ko | 204 ko | [liste des fichiers] |