Skip to content
Sections
>> Trisquel >> Paquets >> aramo >> science >> lighter
[  aramo  ]
[ Paquet source : lighter  ]

Paquet : lighter (1.1.2-6)

fast and memory-efficient sequencing error corrector

Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting k-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input k-mers and the other holding k-mers likely to be correct. As long as the sampling fraction is adjusted in inverse proportion to the depth of sequencing, Bloom filter size can be held constant while maintaining near-constant accuracy. Lighter is parallelized, uses no secondary storage, and is both faster and more memory-efficient than competing approaches while achieving comparable accuracy.

Autres paquets associés à lighter

  • dépendances
  • recommandations
  • suggestions
  • dep: libc6 (>= 2.34)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libgcc-s1 (>= 3.3.1) [non armhf]
    GCC support library
    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5)
    GNU Standard C++ Library v3
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime

Télécharger lighter

Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 46,7 ko120 ko [liste des fichiers]
arm64 45,7 ko108 ko [liste des fichiers]
armhf 47,1 ko99 ko [liste des fichiers]
ppc64el 50,4 ko180 ko [liste des fichiers]