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Paquet : python3-cobra (0.23.0-1build1)

constraint-based modeling of biological networks with Python 3

COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes. COBRApy is a constraint-based modeling package that is designed to accommodate the biological complexity of the next generation of COBRA models and provides access to commonly used COBRA methods, such as flux balance analysis, flux variability analysis, and gene deletion analyses.

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  • dep: python-cobra-data (= 0.23.0-1build1)
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  • dep: python3
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  • dep: python3-appdirs (<< 2)
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    dep: python3-appdirs (>= 1.4)
  • dep: python3-depinfo
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  • dep: python3-diskcache
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  • dep: python3-future
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  • dep: python3-httpx
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  • dep: python3-numpy
    Fast array facility to the Python 3 language
  • dep: python3-optlang
    sympy based mathematical programming language (Python 3)
  • dep: python3-pandas
    data structures for "relational" or "labeled" data
  • dep: python3-pydantic
    Data validation and settings management using Python type hinting
  • dep: python3-rich
    render rich text, tables, progress bars, syntax highlighting, markdown and more
  • dep: python3-ruamel.yaml
    roundtrip YAML parser/emitter (Python 3 module)
  • dep: python3-sbml5
    System Biology Markup Language library - Python3 bindings
  • dep: python3-simplejson
    simple, fast, extensible JSON encoder/decoder for Python 3.x
  • dep: python3-swiglpk (>= 4.65.1)
    Plain Python bindings for the GNU Linear Programming Kit (Python 3)
  • dep: python3-tabulate
    pretty-print tabular data in Python3
  • sug: python3-matplotlib
    Python based plotting system in a style similar to Matlab (Python 3)
  • sug: qsopt-ex
    Exact linear programming solver

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Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 113,3 ko627 ko [liste des fichiers]
arm64 113,3 ko627 ko [liste des fichiers]
armhf 113,3 ko627 ko [liste des fichiers]
ppc64el 113,3 ko627 ko [liste des fichiers]