Paquet : art-nextgen-simulation-tools (20160605+dfsg-2build1)
Liens pour art-nextgen-simulation-tools
Ressources Trisquel :
Télécharger le paquet source art-nextgen-simulation-tools :
- [art-nextgen-simulation-tools_20160605+dfsg-2build1.dsc]
- [art-nextgen-simulation-tools_20160605+dfsg.orig.tar.xz]
- [art-nextgen-simulation-tools_20160605+dfsg-2build1.debian.tar.xz]
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Andreas Tille
Ressources externes :
- Page d'accueil [www.niehs.nih.gov]
Paquets similaires :
simulation tools to generate synthetic next-generation sequencing reads
ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.4) [i386]
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- dep: libgcc1 (>= 1:3.0)
- GCC support library
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- dep: libgsl23
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- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
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- sug: art-nextgen-simulation-tools-profiles
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Télécharger art-nextgen-simulation-tools
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 1 713,7 ko | 5763 ko | [liste des fichiers] |
i386 | 1 717,1 ko | 5780 ko | [liste des fichiers] |