Paquet : atac (0~20150903+r2013-3)
Liens pour atac
Ressources Trisquel :
Télécharger le paquet source kmer :
- [kmer_0~20150903+r2013-3.dsc]
- [kmer_0~20150903+r2013.orig.tar.gz]
- [kmer_0~20150903+r2013-3.debian.tar.xz]
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Afif Elghraoui
Ressources externes :
- Page d'accueil [kmer.sourceforge.net]
Paquets similaires :
genome assembly-to-assembly comparison
atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome.
The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions.
Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences.
This package is part of the Kmer suite.
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Télécharger atac
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 376,2 ko | 2683 ko | [liste des fichiers] |
i386 | 417,3 ko | 3073 ko | [liste des fichiers] |