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Paquet : bitseq (0.7.5+dfsg-3ubuntu1)

Bayesian Inference of Transcripts from Sequencing Data

BitSeq is an application for inferring expression levels of individual transcripts from sequencing (RNA-Seq) data and estimating differential expression (DE) between conditions. An advantage of this approach is the ability to account for both technical uncertainty and intrinsic biological variance in order to avoid false DE calls. The technical contribution to the uncertainty comes both from finite read-depth and the possibly ambiguous mapping of reads to multiple transcripts.

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  • dep: libgcc1 (>= 1:3.0)
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  • dep: libgomp1 (>= 4.9)
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  • dep: libstdc++6 (>= 5.2)
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  • dep: python
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  • dep: zlib1g (>= 1:1.2.3.3)
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  • sug: samtools
    processing sequence alignments in SAM and BAM formats

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Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 330,6 ko1819 ko [liste des fichiers]
i386 352,9 ko1886 ko [liste des fichiers]