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[ Paquet source : discosnp ]
Paquet : discosnp (1.2.6-2)
Liens pour discosnp
Ressources Trisquel :
Télécharger le paquet source discosnp :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Olivier Sallou
- Andreas Tille
Ressources externes :
- Page d'accueil [colibread.inria.fr]
Paquets similaires :
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS).
Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed.
The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP:
1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism.
This program is superseded by DiscoSnp++.
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Télécharger discosnp
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 143,9 ko | 336 ko | [liste des fichiers] |
| i386 | 154,8 ko | 351 ko | [liste des fichiers] |