Paquet : fasttree (2.1.10-1)
Liens pour fasttree
Ressources Trisquel :
Télécharger le paquet source fasttree :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Steffen Moeller
- Thorsten Alteholz
- Andreas Tille
- Roland Fehrenbacher
Ressources externes :
- Page d'accueil [www.microbesonline.org]
Paquets similaires :
phylogenetic trees from alignments of nucleotide or protein sequences
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. It handles alignments with up to a million of sequences in a reasonable amount of time and memory. For large alignments, FastTree is 100-1,000 times faster than PhyML 3.0 or RAxML 7.
FastTree is more accurate than PhyML 3 with default settings, and much more accurate than the distance-matrix methods that are traditionally used for large alignments. FastTree uses the Jukes-Cantor or generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton 1992) model of amino acid evolution. To account for the varying rates of evolution across sites, FastTree uses a single rate for each site (the "CAT" approximation). To quickly estimate the reliability of each split in the tree, FastTree computes local support values with the Shimodaira-Hasegawa test (these are the same as PhyML 3's "SH-like local supports").
This package contains a single threaded version (fasttree) and a parallel version which uses OpenMP (fasttreMP).
Autres paquets associés à fasttree
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- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.7) [i386]
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- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
Télécharger fasttree
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 166,4 ko | 467 ko | [liste des fichiers] |
i386 | 167,9 ko | 495 ko | [liste des fichiers] |