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Paquet : freebayes (1.1.0-1)

Bayesian haplotype-based polymorphism discovery and genotyping

FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.

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  • dep: libc6 (>= 2.14)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libdisorder0 (>= 0.0.2)
    library for entropy measurement of byte streams
  • dep: libfml0
    library for assembling Illumina short reads in small regions
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libhts2 (>= 1.0)
    C library for high-throughput sequencing data formats
  • dep: libjsoncpp1 (>= 1.7.4)
    library for reading and writing JSON for C++
  • dep: libseqlib0
    C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  • dep: libsmithwaterman0
    determine similar regions between two strings or genomic sequences (lib)
  • dep: libssw0
    fast SIMD parallelized implementation of the Smith-Waterman algorithm
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3
  • dep: libtabixpp0
    C++ wrapper to tabix indexer
  • dep: libvcflib1
    C++ library for parsing and manipulating VCF files
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: parallel
    build and execute command lines from standard input in parallel

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amd64 935,1 ko2967 ko [liste des fichiers]