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Paquet : metastudent (2.0.1-5)

predictor of Gene Ontology terms from protein sequence

Often, only the sequence of a protein is known, but not its functions. Metastudent will try to predict missing functional annotations through homology searches (BLAST).

All predicted functions correspond to Gene Ontology (GO) terms from the Molecular Function (MFO), the Biological Process (BPO) and the Cellular Component Ontology (CCO) and are associated with a reliability score.

Autres paquets associés à metastudent

  • dépendances
  • recommandations
  • suggestions
  • dep: blast2
    transitional dummy package to ncbi-blast+-legacy
  • dep: default-jre
    Standard Java or Java compatible Runtime
  • dep: libfile-chdir-perl
    more sensible way to change directories
  • dep: libgo-perl (>= 0.15-3)
    perl modules for GO and other OBO ontologies
  • dep: libgraphviz-perl
    Perl interface to the GraphViz graphing tool
  • dep: libipc-run-perl
    Perl module for running processes
  • dep: metastudent-data (>= 2.0.0)
    predictor of Gene Ontology terms from protein sequence - data files
  • dep: perl
    Larry Wall's Practical Extraction and Report Language
  • dep: python
    interactive high-level object-oriented language (default version)

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