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Paquet : miniasm (0.2+dfsg-2)

ultrafast de novo assembler for long noisy DNA sequencing reads

Miniasm is an experimental very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.

Autres paquets associés à miniasm

  • dépendances
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  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
    dep: libc6 (>= 2.4) [i386]
  • dep: zlib1g (>= 1:1.1.4)
    compression library - runtime
  • rec: minimap
    tool for approximate mapping of long biosequences such as DNA reads

Télécharger miniasm

Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 28,6 ko70 ko [liste des fichiers]
i386 29,5 ko70 ko [liste des fichiers]