Paquet : sortmerna (2.1-2)
Liens pour sortmerna
Ressources Trisquel :
Télécharger le paquet source sortmerna :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Tim Booth
- Andreas Tille
Ressources externes :
- Page d'accueil [bioinfo.lifl.fr]
Paquets similaires :
tool for filtering, mapping and OTU-picking NGS reads
SortMeRNA is a biological sequence analysis tool for filtering, mapping and OTU-picking NGS reads. The core algorithm is based on approximate seeds and allows for fast and sensitive analyses of nucleotide sequences. The main application of SortMeRNA is filtering rRNA from metatranscriptomic data. Additional applications include OTU-picking and taxonomy assignation available through QIIME v1.9+ (http://qiime.org - v1.9.0-rc1). SortMeRNA takes as input a file of reads (fasta or fastq format) and one or multiple rRNA database file(s), and sorts apart rRNA and rejected reads into two files specified by the user. Optionally, it can provide high quality local alignments of rRNA reads against the rRNA database. SortMeRNA works with Illumina, 454, Ion Torrent and PacBio data, and can produce SAM and BLAST-like alignments.
Autres paquets associés à sortmerna
|
|
|
-
- dep: libc6 (>= 2.14) [amd64]
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
- dep: libc6 (>= 2.4) [i386]
-
- dep: libgcc1 (>= 1:3.0) [amd64]
- GCC support library
- dep: libgcc1 (>= 1:4.2) [i386]
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libstdc++6 (>= 5.2)
- GNU Standard C++ Library v3
-
- dep: sse2-support [i386]
- prevent installation on processors without required instructions
-
- rec: python
- interactive high-level object-oriented language (default version)
Télécharger sortmerna
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 521,7 ko | 979 ko | [liste des fichiers] |
i386 | 519,6 ko | 1013 ko | [liste des fichiers] |