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[ Paquet source : spades  ]

Paquet : spades (3.11.1+dfsg-1)

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spades

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genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.

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    toolkit for manipulating BAM (genome alignment) files
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    Burrows-Wheeler Aligner
  • dep: libc6 (>= 2.15)
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
  • dep: libgcc1 (>= 1:4.0)
    GCC support library
  • dep: libgomp1 (>= 4.9)
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  • dep: libhat-trie0
    HAT-trie, an extremely efficient (space and time) modern variant of tries
  • dep: libjemalloc1 (>= 2.1.1)
    general-purpose scalable concurrent malloc(3) implementation
  • dep: libnlopt0 (>= 2.2.4)
    nonlinear optimization library
  • dep: libssw0
    fast SIMD parallelized implementation of the Smith-Waterman algorithm
  • dep: libstdc++6 (>= 6)
    GNU Standard C++ Library v3
  • dep: python
    interactive high-level object-oriented language (default version)
  • dep: python-joblib
    tools to provide lightweight pipelining in Python
  • dep: python-yaml
    YAML parser and emitter for Python
  • dep: samtools
    processing sequence alignments in SAM and BAM formats
  • dep: zlib1g (>= 1:1.2.3.3)
    compression library - runtime

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amd64 3 673,8 ko17287 ko [liste des fichiers]