Paquet : spades (3.11.1+dfsg-1)
Liens pour spades
Ressources Trisquel :
Télécharger le paquet source spades :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Andreas Tille
- Afif Elghraoui
- Sascha Steinbiss
- Michael R. Crusoe
Ressources externes :
- Page d'accueil [cab.spbu.ru]
Paquets similaires :
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
Autres paquets associés à spades
|
|
|
-
- dep: bamtools
- toolkit for manipulating BAM (genome alignment) files
-
- dep: bwa
- Burrows-Wheeler Aligner
-
- dep: libc6 (>= 2.15)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
-
- dep: libgcc1 (>= 1:4.0)
- GCC support library
-
- dep: libgomp1 (>= 4.9)
- GCC OpenMP (GOMP) support library
-
- dep: libhat-trie0
- HAT-trie, an extremely efficient (space and time) modern variant of tries
-
- dep: libjemalloc1 (>= 2.1.1)
- general-purpose scalable concurrent malloc(3) implementation
-
- dep: libnlopt0 (>= 2.2.4)
- nonlinear optimization library
-
- dep: libssw0
- fast SIMD parallelized implementation of the Smith-Waterman algorithm
-
- dep: libstdc++6 (>= 6)
- GNU Standard C++ Library v3
-
- dep: python
- interactive high-level object-oriented language (default version)
-
- dep: python-joblib
- tools to provide lightweight pipelining in Python
-
- dep: python-yaml
- YAML parser and emitter for Python
-
- dep: samtools
- processing sequence alignments in SAM and BAM formats
-
- dep: zlib1g (>= 1:1.2.3.3)
- compression library - runtime
Télécharger spades
Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
---|---|---|---|
amd64 | 3 673,8 ko | 17287 ko | [liste des fichiers] |