Skip to content
Sections
>> Trisquel >> Paquets >> etiona >> science >> tandem-mass
[  etiona  ] [  nabia  ] [  aramo  ]
[ Paquet source : tandem-mass  ]

Paquet : tandem-mass (1:20170201.1-1)

mass spectrometry software for protein identification

X! Tandem can match tandem mass spectra with peptide sequences, in a process that is commonly used to perform protein identification.

This software has a very simple, unsophisticated application programming interface (API): it simply takes an XML file of instructions on its command line, and outputs the results into an XML file, which has been specified in the input XML file. The output file format is described at http://www.thegpm.org/docs/X_series_output_form.pdf.

Unlike some earlier generation search engines, all of the X! Series search engines calculate statistical confidence (expectation values) for all of the individual spectrum-to-sequence assignments. They also reassemble all of the peptide assignments in a data set onto the known protein sequences and assign the statistical confidence that this assembly and alignment is non-random. The formula for which can be found here. Therefore, separate assembly and statistical analysis software, e.g. PeptideProphet and ProteinProphet, do not need to be used.

Autres paquets associés à tandem-mass

  • dépendances
  • recommandations
  • suggestions
  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: libexpat1 (>= 2.0.1)
    XML parsing C library - runtime library
  • dep: libgcc1 (>= 1:3.0)
    GCC support library
  • dep: libstdc++6 (>= 5.2)
    GNU Standard C++ Library v3

Télécharger tandem-mass

Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 216,9 ko651 ko [liste des fichiers]
i386 244,2 ko706 ko [liste des fichiers]