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[ Paquet source : velvet  ]

Paquet : velvet-long (1.2.10+dfsg1-3build1)

Nucleic acid sequence assembler for very short reads, long version

Velvet is a de novo genomic assembler specially designed for short read sequencing technologies, such as Solexa or 454, developed by Daniel Zerbino and Ewan Birney at the European Bioinformatics Institute (EMBL-EBI), near Cambridge, in the United Kingdom.

Velvet currently takes in short read sequences, removes errors then produces high quality unique contigs. It then uses paired read information, if available, to retrieve the repeated areas between contigs.

This package installs special long-mode versions of Velvet, as recommended in the Velvet tutorials.

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  • dep: libc6 (>= 2.14) [amd64]
    GNU C Library: Shared libraries
    un paquet virtuel est également fourni par libc6-udeb
    dep: libc6 (>= 2.7) [i386]
  • dep: libgomp1 (>= 4.9)
    GCC OpenMP (GOMP) support library
  • dep: velvet
    Nucleic acid sequence assembler for very short reads
  • dep: zlib1g (>= 1:1.2.0.2)
    compression library - runtime

Télécharger velvet-long

Télécharger pour toutes les architectures proposées
Architecture Taille du paquet Espace occupé une fois installé Fichiers
amd64 190,3 ko1133 ko [liste des fichiers]
i386 221,4 ko1431 ko [liste des fichiers]