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[ Paquet source : libgkarrays  ]

Paquet : libgkarrays1 (2.1.0+dfsg-2build1)

library to query large collection of NGS sequences

Gk-arrays are provided as a simple-to-use C++ library dedicated to queries on large collection of sequences as produced by high-throughput sequencers (e.g. HiSeq 2000 from Illumina, 454 from Roche).

Gk-arrays index k-mers of reads and allows one to answer different queries on that read collection (e.g. how many reads share this k-mer? where does this k-mer occur in the read collection?).

Gk-arrays consist of a space-efficient alternative to hash tables while being similar in terms of query times.

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  • dep: libc6 (>= 2.14) [amd64]
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    dep: libc6 (>= 2.4) [armhf]
  • dep: libgcc-s1 (>= 3.0) [amd64]
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    dep: libgcc-s1 (>= 3.5) [armhf]
  • dep: libstdc++6 (>= 5.2)
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  • dep: zlib1g (>= 1:1.1.4)
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amd64 48,7 ko158 ko [liste des fichiers]
armhf 48,0 ko124 ko [liste des fichiers]