Paquet : python3-dna-jellyfish (2.3.0-4build1)
Liens pour python3-dna-jellyfish
Ressources Trisquel :
Télécharger le paquet source jellyfish :
Responsable :
Original Maintainers:
- Debian Med Packaging Team (Archive du courrier électronique)
- Shaun Jackman
- Andreas Tille
- Michael R. Crusoe
Ressources externes :
- Page d'accueil [www.cbcb.umd.edu]
Paquets similaires :
count k-mers in DNA sequences (Python bindings of jellyfish)
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command.
This package contains the Python bindings of jellyfish.
Autres paquets associés à python3-dna-jellyfish
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- dep: libc6 (>= 2.14)
- GNU C Library: Shared libraries
un paquet virtuel est également fourni par libc6-udeb
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- dep: libgcc-s1 (>= 3.0)
- GCC support library
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- dep: libjellyfish-2.0-2 (>= 2.3.0)
- count k-mers in DNA sequences (dynamic library of jellyfish)
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- dep: libstdc++6 (>= 9)
- GNU Standard C++ Library v3
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- dep: python3
- interactive high-level object-oriented language (default python3 version)
- dep: python3 (<< 3.9)
- dep: python3 (>= 3.8~)
Télécharger python3-dna-jellyfish
| Architecture | Taille du paquet | Espace occupé une fois installé | Fichiers |
|---|---|---|---|
| amd64 | 53,5 ko | 187 ko | [liste des fichiers] |