File list of package r-bioc-mutationalpatterns in aramo of architecture all
/usr/lib/R/site-library/MutationalPatterns/CITATION /usr/lib/R/site-library/MutationalPatterns/DESCRIPTION /usr/lib/R/site-library/MutationalPatterns/INDEX /usr/lib/R/site-library/MutationalPatterns/NAMESPACE /usr/lib/R/site-library/MutationalPatterns/NEWS /usr/lib/R/site-library/MutationalPatterns/Meta/Rd.rds /usr/lib/R/site-library/MutationalPatterns/Meta/features.rds /usr/lib/R/site-library/MutationalPatterns/Meta/hsearch.rds /usr/lib/R/site-library/MutationalPatterns/Meta/links.rds /usr/lib/R/site-library/MutationalPatterns/Meta/nsInfo.rds /usr/lib/R/site-library/MutationalPatterns/Meta/package.rds /usr/lib/R/site-library/MutationalPatterns/Meta/vignette.rds /usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns /usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdb /usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdx /usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.R /usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.Rmd /usr/lib/R/site-library/MutationalPatterns/doc/index.html /usr/lib/R/site-library/MutationalPatterns/extdata/ReplicationDirectionRegions.bed /usr/lib/R/site-library/MutationalPatterns/extdata/blood-AC.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/blood-ACC55.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/blood-BCH.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/callableloci-sample.bed /usr/lib/R/site-library/MutationalPatterns/extdata/colon1-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/colon2-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/colon3-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/empty.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/intestine1-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/intestine2-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/intestine3-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/liver1-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/liver2-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/liver3-sample.vcf /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/SIGNAL_conversion_matrix.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.1_reference.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh37.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh38.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_mm10.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_SIGNAL_exposure.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.1_reference.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.2_reference_GRCh37.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.1_reference.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh37.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh38.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_mm10.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_exposure.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_reference.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_tissue.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SPARSE_reference.txt /usr/lib/R/site-library/MutationalPatterns/extdata/signatures/tsb_snv_COSMIC_v3.1_reference.txt /usr/lib/R/site-library/MutationalPatterns/help/AnIndex /usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdb /usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdx /usr/lib/R/site-library/MutationalPatterns/help/aliases.rds /usr/lib/R/site-library/MutationalPatterns/help/paths.rds /usr/lib/R/site-library/MutationalPatterns/html/00Index.html /usr/lib/R/site-library/MutationalPatterns/html/R.css /usr/lib/R/site-library/MutationalPatterns/scripts/Format_signatures.R /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_dbs.R /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_indels.R /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_mbs.R /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_regulatory_regions.R /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_snvs.R /usr/lib/R/site-library/MutationalPatterns/scripts/create_example_vcfs.R /usr/lib/R/site-library/MutationalPatterns/states/CTCF_g_data.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_dbs_counts.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_grl.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs_context.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel_context.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_grl_mbs.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_indel_counts.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_indels_counts_split_region.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_indels_longmatrix_split_region.rds /usr/lib/R/site-library/MutationalPatterns/states/blood_mbs_counts.rds /usr/lib/R/site-library/MutationalPatterns/states/blosum62.rds /usr/lib/R/site-library/MutationalPatterns/states/bootstrapped_snv_refit.rds /usr/lib/R/site-library/MutationalPatterns/states/context_mismatches.rds /usr/lib/R/site-library/MutationalPatterns/states/dbs_refit.rds /usr/lib/R/site-library/MutationalPatterns/states/distr_data.rds /usr/lib/R/site-library/MutationalPatterns/states/grl_split_region.rds /usr/lib/R/site-library/MutationalPatterns/states/indel_refit.rds /usr/lib/R/site-library/MutationalPatterns/states/lesion_segregation.rds /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data.rds /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data_extended.rds /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_longregions.rds /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_repli.rds /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_s_data.rds /usr/lib/R/site-library/MutationalPatterns/states/mut_mat_splitregions.rds /usr/lib/R/site-library/MutationalPatterns/states/nmf_res_data.rds /usr/lib/R/site-library/MutationalPatterns/states/nmf_res_strand_data.rds /usr/lib/R/site-library/MutationalPatterns/states/promoter_flanking_g_data.rds /usr/lib/R/site-library/MutationalPatterns/states/promoter_g_data.rds /usr/lib/R/site-library/MutationalPatterns/states/read_vcfs_as_granges_output.rds /usr/lib/R/site-library/MutationalPatterns/states/regional_sims.rds /usr/lib/R/site-library/MutationalPatterns/states/regulatory_data.rds /usr/lib/R/site-library/MutationalPatterns/states/repli_strand.rds /usr/lib/R/site-library/MutationalPatterns/states/snv_refit.rds /usr/lib/R/site-library/MutationalPatterns/states/strict_best_snv_refit.rds /usr/lib/R/site-library/MutationalPatterns/states/strict_snv_refit.rds /usr/share/doc/r-bioc-mutationalpatterns/changelog.Debian.gz /usr/share/doc/r-bioc-mutationalpatterns/copyright