[ Source: mapdamage ]
Package: mapdamage (2.2.1+dfsg-2)
Links for mapdamage
Trisquel Resources:
Download Source Package mapdamage:
- [mapdamage_2.2.1+dfsg-2.dsc]
- [mapdamage_2.2.1+dfsg.orig.tar.xz]
- [mapdamage_2.2.1+dfsg-2.debian.tar.xz]
Maintainer:
Original Maintainers:
- Debian Med Packaging Team (Mail Archive)
- Andreas Tille
External Resources:
- Homepage [ginolhac.github.io]
Similar packages:
tracking and quantifying damage patterns in ancient DNA sequences
MapDamage is a computational framework written in Python and R, which tracks and quantifies DNA damage patterns among ancient DNA sequencing reads generated by Next-Generation Sequencing platforms.
MapDamage is developed at the Centre for GeoGenetics by the Orlando Group.
Other Packages Related to mapdamage
|
|
|
-
- dep: libopenblas-dev
- Optimized BLAS (linear algebra) library (dev, meta)
- or libblas-dev
- Basic Linear Algebra Subroutines 3, static library
- or libatlas-base-dev
- Automatically Tuned Linear Algebra Software, generic static
- or libblas.so
- virtual package provided by libatlas-base-dev, libblas-dev, libblis-openmp-dev, libblis-pthread-dev, libblis-serial-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev
-
- dep: libopenblas-dev
- Optimized BLAS (linear algebra) library (dev, meta)
- or liblapack-dev
- Library of linear algebra routines 3 - static version
- or libatlas-base-dev
- Automatically Tuned Linear Algebra Software, generic static
- or liblapack.so
- virtual package provided by libatlas-base-dev, liblapack-dev, libopenblas-openmp-dev, libopenblas-pthread-dev, libopenblas-serial-dev
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)
-
- dep: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
-
- dep: r-base-core
- GNU R core of statistical computation and graphics system
-
- dep: r-cran-gam
- Generalized Additive Models for R
-
- dep: r-cran-ggplot2
- implementation of the Grammar of Graphics
-
- dep: r-cran-inline
- GNU R package to inline C, C++, Fortran functions from R
-
- dep: r-cran-rcpp
- GNU R package for Seamless R and C++ Integration
-
- dep: r-cran-rcppgsl
- GNU R package for integration with the GNU GSL
-
- dep: seqtk
- Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
Download mapdamage
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| all | 42.9 kB | 191 kB | [list of files] |